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BJ-2412   Click here for help

GtoPdb Ligand ID: 14315

Synonyms: BJ2412 | compound 6D [PMID: 27145715] | compound I-40 [WO2017082569A1]
Compound class: Synthetic organic
Comment: BJ-2412 is pyridinol-sunitinib hybrid molecule designed for anti-tumour activity [1]. Like the parental drug sunitinib BJ-2412 has inhibitory activity at VEGFR2 (KDR).
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 8
Hydrogen bond donors 4
Rotatable bonds 8
Topological polar surface area 106.06
Molecular weight 425.52
XLogP 1.61
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CCN(CC)CCNC(=O)C1=C(C)NC(=C1C)/C=C\2/C3=C(N=C(C)C(=C3C)O)NC2=O
Isomeric SMILES CCN(CC)CCNC(=O)C1=C(NC(=C1C)/C=C\2/C3=C(C(=C(N=C3NC2=O)C)O)C)C
InChI InChI=1S/C23H31N5O3/c1-7-28(8-2)10-9-24-23(31)18-12(3)17(25-14(18)5)11-16-19-13(4)20(29)15(6)26-21(19)27-22(16)30/h11,25,29H,7-10H2,1-6H3,(H,24,31)(H,26,27,30)/b16-11-
InChI Key GJZNJHODOSTELX-WJDWOHSUSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Bioactivity Comments
BJ-2412 (500 nM) inhibits VEGFR2 kinase activity by 78% in vitro. In the same assay sunitinib inhibits kinase activity by >95%. The compound is cytotoxic against a range of human tumour cell lines, principally via antiangiogenic activity.
Selectivity at catalytic receptors
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
kinase insert domain receptor Hs Inhibitor Inhibition - - - 1
⤷ [1]