thalidomide [Ligand Id: 7327] activity data from GtoPdb and ChEMBL

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ChEMBL ligand: CHEMBL468 (NSC-527179, Thalidomide, Thaled, NSC-66847, Distaval, .alpha.-phthalimidoglutarimide, Contergan, Pantosediv, Pharmion, Thalidomide bms (previously thalidomide celgene), Myrin, Neurosedyn, Kevadon, Talidex, Softenon, N-phthalylglutamic acid imide, Thalidomide lipomed, Talidomida, Thalomid, K-17, Celgene)
  • Cereblon isoform 4 in Magnetospirillum gryphiswaldense [ChEMBL: CHEMBL3763007] [UniProtKB: A4TVL0]
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  • Glyceraldehyde-3-phosphate dehydrogenase, cytosolic in Leishmania mexicana [ChEMBL: CHEMBL4137] [UniProtKB: Q01558]
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  • Prostaglandin G/H synthase 1 in Sheep [ChEMBL: CHEMBL2949] [UniProtKB: P05979]
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  • Prostaglandin G/H synthase 2 in Sheep [ChEMBL: CHEMBL4102] [UniProtKB: P79208]
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DB Assay description Assay Type Standard value Standard parameter Original value Original units Original parameter Reference
Cereblon isoform 4 in Magnetospirillum gryphiswaldense (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL3763007] [UniProtKB: A4TVL0]
ChEMBL Inhibition of MANT-uracil binding to Magnetospirillum gryphiswaldense cereblon isoform 4 Y101F mutant by Cheng-Prusoff equation analysis B 5.02 pKi 9600 nM Ki J Med Chem (2016) 59: 770-774 [PMID:26730808]
ChEMBL Inhibition of MANT-uracil binding to wild type Magnetospirillum gryphiswaldense cereblon isoform 4 by Cheng-Prusoff equation analysis B 5.36 pKi 4400 nM Ki J Med Chem (2016) 59: 770-774 [PMID:26730808]
ChEMBL Inhibition of MANT-uracil binding to wild-type Magnetospirillum gryphiswaldense CRBN isoform 4 by FRET assay B 5.36 pKi 4400 nM Ki J Med Chem (2019) 62: 6615-6629 [PMID:31251063]
ChEMBL Inhibition of MANT-uracil binding to Magnetospirillum gryphiswaldense cereblon isoform 4 Y101F mutant by FRET assay B 4.97 pIC50 10700 nM IC50 J Med Chem (2016) 59: 770-774 [PMID:26730808]
ChEMBL Inhibition of MANT-uracil binding to wild type Magnetospirillum gryphiswaldense cereblon isoform 4 by FRET assay B 5.11 pIC50 7800 nM IC50 J Med Chem (2016) 59: 770-774 [PMID:26730808]
Glyceraldehyde-3-phosphate dehydrogenase, cytosolic in Leishmania mexicana (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL4137] [UniProtKB: Q01558]
ChEMBL cytomteric bead array (CBA) assay: The Fix buffer I was warmed up to 37° C. in an incubator or water bath prior to use. The Perm Buffer III was chilled in a â¿¿20° C. freezer prior to use. The cells were collected at the end of treatment with testing compounds. One volume of the pre-warmed Fix Buffer I was mixed with one volume of cell suspension. If the volume of the cell suspension is greater than 100 uL, the cells were spun and resuspended in 100 uL medium or PBS. The buffer and the cell suspension were mixed well and incubated in a 37° C. water bath for 10 min. The cells were spun down at 250ÿg for 10 min and the supernatant was aspirated. The cells were washed once with BD Stain Buffer. The pellet was spun and the supernatant was removed. The cells were vortexed to be loosened, and permeabilized by slowly adding cold Perm Buffer III while vortexing or mixing. Subsequently, the cells were incubated on ice for 30 min. The cells were then spun down and washed twice with Stain Buffer. The supernatant was spun and aspirated. The cells were resuspended in a small volume of Stain buffer (50 or 100 uL containing from 200,000 to 1 million cells). Anti-IKFZ3 antibody was added to the cell suspension at 1:1000 dilution and incubated for 45 min at 4° C. The cells were then spun down and washed once with stain buffer. Secondary antibody was added to the cells at 1:5000 dilution and incubated at room temperature for 20 min in the dark. The cells were washed once with stain buffer prior to analysis by FACS. B 5 pIC50 >10000 nM IC50 US-9694015-B2. Methods for the treatment of locally advanced breast cancer (2017)
Interleukin-1 beta in Human (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL1909490] [UniProtKB: P01584]
ChEMBL cytomteric bead array (CBA) assay: The Fix buffer I was warmed up to 37° C. in an incubator or water bath prior to use. The Perm Buffer III was chilled in a â¿¿20° C. freezer prior to use. The cells were collected at the end of treatment with testing compounds. One volume of the pre-warmed Fix Buffer I was mixed with one volume of cell suspension. If the volume of the cell suspension is greater than 100 uL, the cells were spun and resuspended in 100 uL medium or PBS. The buffer and the cell suspension were mixed well and incubated in a 37° C. water bath for 10 min. The cells were spun down at 250ÿg for 10 min and the supernatant was aspirated. The cells were washed once with BD Stain Buffer. The pellet was spun and the supernatant was removed. The cells were vortexed to be loosened, and permeabilized by slowly adding cold Perm Buffer III while vortexing or mixing. Subsequently, the cells were incubated on ice for 30 min. The cells were then spun down and washed twice with Stain Buffer. The supernatant was spun and aspirated. The cells were resuspended in a small volume of Stain buffer (50 or 100 uL containing from 200,000 to 1 million cells). Anti-IKFZ3 antibody was added to the cell suspension at 1:1000 dilution and incubated for 45 min at 4° C. The cells were then spun down and washed once with stain buffer. Secondary antibody was added to the cells at 1:5000 dilution and incubated at room temperature for 20 min in the dark. The cells were washed once with stain buffer prior to analysis by FACS. B 5 pIC50 >10000 nM IC50 US-9694015-B2. Methods for the treatment of locally advanced breast cancer (2017)
Prostaglandin G/H synthase 1 in Sheep (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL2949] [UniProtKB: P05979]
ChEMBL Inhibitory activity (RA1) against Prostaglandin G/H synthase 1 was calculated relative to aspirin B 6.43 pIC50 370 nM IC50 Bioorg Med Chem Lett (2002) 12: 1043-1046 [PMID:11909713]
Prostaglandin G/H synthase 2 in Sheep (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL4102] [UniProtKB: P79208]
ChEMBL Inhibitory activity (RA2) against Prostaglandin G/H synthase 2 was calculated relative to aspirin B 6.3 pIC50 500 nM IC50 Bioorg Med Chem Lett (2002) 12: 1043-1046 [PMID:11909713]
cereblon/Protein cereblon in Human (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL3763008] [GtoPdb: 3086] [UniProtKB: Q96SW2]
ChEMBL Binding affinity to CRBN (unknown origin) assessed as dissociation constant by TR-FRET assay B 6.6 pKd 250 nM Kd Eur J Med Chem (2024) 263: 115950-115950 [PMID:37984298]
ChEMBL Binding affinity to CRBN (unknown origin) assessed as dissociation constant B 6.6 pKd 250 nM Kd Eur J Med Chem (2023) 257: 115492-115492 [PMID:37210838]
GtoPdb Determined in a BiaCore assay using immobilised thalidomide and recombinant cereblon protein. - 8.07 pKd 8.5 nM Kd Science (2010) 327: 1345-50 [PMID:20223979]
ChEMBL Inhibition of MANT-uracil binding to human CRBN (delta 1 to 315) by Cheng-Prusoff equation analysis B 4.64 pKi 22700 nM Ki J Med Chem (2016) 59: 770-774 [PMID:26730808]
ChEMBL Binding affinity to human CRBN TBD (319 to 425 residues) assessed as inhibition constant by MST assay B 5.07 pKi 8550 nM Ki Bioorg Med Chem Lett (2024) 110: 129858-129858 [PMID:38917956]
ChEMBL Binding affinity to human CRBN-thalidomide binding domain expressed in Escherichia coli by measuring baseline corrected normalized fluorescence in presence of 0.5% DMSO by MST based assay B 5.07 pKi 8510 nM Ki ACS Med Chem Lett (2021) 12: 74-81 [PMID:33488967]
ChEMBL Binding affinity to human CRBN thalidomide binding domain assessed as inhibition constant by microscale thermophoresis analysis B 5.07 pKi 8500 nM Ki Eur J Med Chem (2023) 246: 114990-114990 [PMID:36476642]
ChEMBL Binding affinity to human CRBN TBD assessed as inhibition constant using BODIPY-uracil as substrate by Microscale thermophoresis assay B 5.07 pKi 8500 nM Ki Eur J Med Chem (2024) 270: 116328-116328 [PMID:38552426]
ChEMBL Binding affinity to CRBN (unknown origin) assessed as inhibition constant by FRET assay B 5.36 pKi 4400 nM Ki J Med Chem (2023) 66: 3173-3194 [PMID:36821822]
ChEMBL Binding affinity to GST-tagged wild-type human CRBN incubated for 3 hrs by TR-FRET assay B 5.74 pKi 1800 nM Ki J Med Chem (2024) 67: 14125-14154 [PMID:39132814]
ChEMBL Binding affinity to CRBN (unknown origin) assessed as inhibition constant B 5.74 pKi 1800 nM Ki J Med Chem (2023) 66: 13280-13303 [PMID:37683104]
ChEMBL Inhibition of MANT-uracil binding to human CRBN (delta 1 to 315) by FRET assay B 4.52 pIC50 29900 nM IC50 J Med Chem (2016) 59: 770-774 [PMID:26730808]
ChEMBL Binding affinity to human CRBN-thalidomide binding domain expressed in Escherichia coli by measuring baseline corrected normalized fluorescence in presence of 0.5% DMSO by MST based assay B 4.64 pIC50 22900 nM IC50 ACS Med Chem Lett (2021) 12: 74-81 [PMID:33488967]
ChEMBL Binding affinity to GST-tagged wild type human CRBN incubated for 3 hrs by TR-FRET assay B 5.54 pIC50 2900 nM IC50 J Med Chem (2023) 66: 12559-12585 [PMID:37647546]
ChEMBL Inhibition of biotinylated thalidomide binding to CRBN (40 to 442 residues) (unknown origin) incubated for 1 hrs by HTRF assay B 5.57 pIC50 2700 nM IC50 J Med Chem (2024) 67: 9194-9213 [PMID:38829718]
ChEMBL Displacement of fluorescent tracer from NanoLuc-tagged CRBN (unknown origin) by NanoBRET assay B 5.83 pIC50 1490 nM IC50 RSC Med Chem (2023) 14: 501-506 [PMID:36970148]
Tumor necrosis factor in Human (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL1825] [UniProtKB: P01375]
ChEMBL cytomteric bead array (CBA) assay: The Fix buffer I was warmed up to 37° C. in an incubator or water bath prior to use. The Perm Buffer III was chilled in a â¿¿20° C. freezer prior to use. The cells were collected at the end of treatment with testing compounds. One volume of the pre-warmed Fix Buffer I was mixed with one volume of cell suspension. If the volume of the cell suspension is greater than 100 uL, the cells were spun and resuspended in 100 uL medium or PBS. The buffer and the cell suspension were mixed well and incubated in a 37° C. water bath for 10 min. The cells were spun down at 250ÿg for 10 min and the supernatant was aspirated. The cells were washed once with BD Stain Buffer. The pellet was spun and the supernatant was removed. The cells were vortexed to be loosened, and permeabilized by slowly adding cold Perm Buffer III while vortexing or mixing. Subsequently, the cells were incubated on ice for 30 min. The cells were then spun down and washed twice with Stain Buffer. The supernatant was spun and aspirated. The cells were resuspended in a small volume of Stain buffer (50 or 100 uL containing from 200,000 to 1 million cells). Anti-IKFZ3 antibody was added to the cell suspension at 1:1000 dilution and incubated for 45 min at 4° C. The cells were then spun down and washed once with stain buffer. Secondary antibody was added to the cells at 1:5000 dilution and incubated at room temperature for 20 min in the dark. The cells were washed once with stain buffer prior to analysis by FACS. B 5 pIC50 >10000 nM IC50 US-9694015-B2. Methods for the treatment of locally advanced breast cancer (2017)
Zinc finger protein Aiolos in Human (target type: SINGLE PROTEIN) [ChEMBL: CHEMBL4739707] [UniProtKB: Q9UKT9]
ChEMBL Induction of ePL tagged Aiolos degradation in human DF15 cells incubated for 4 hrs by luminescence based assay B 6.48 pEC50 330 nM EC50 J Med Chem (2023) 66: 16388-16409 [PMID:37991844]

ChEMBL data shown on this page come from version 36:

Zdrazil B, Felix E, Hunter F, Manners EJ, Blackshaw J, Corbett S, de Veij M, Ioannidis H, Lopez DM, Mosquera JF, Magarinos MP, Bosc N, Arcila R, Kizilören T, Gaulton A, Bento AP, Adasme MF, Monecke P, Landrum GA, Leach AR. (2024). The ChEMBL Database in 2023: a drug discovery platform spanning multiple bioactivity data types and time periods. Nucleic Acids Res., 52(D1). DOI: 10.1093/nar/gkad1004. [EPMCID:10767899] [PMID:37933841]
Davies M, Nowotka M, Papadatos G, Dedman N, Gaulton A, Atkinson F, Bellis L, Overington JP. (2015) 'ChEMBL web services: streamlining access to drug discovery data and utilities.' Nucleic Acids Res., 43(W1). DOI: 10.1093/nar/gkv352. [EPMCID:25883136]