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ranimycin   Click here for help

GtoPdb Ligand ID: 10850

Synonyms: Rancomycin 2 | U-25,873 | U-25873
Compound class: Synthetic organic
Comment: Ranimycin is a lincosamide antibacterial, that was derived from a variant of Streptomyces lincolnensis.
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 6
Hydrogen bond donors 3
Rotatable bonds 5
Topological polar surface area 104.06
Molecular weight 258.11
XLogP 0.29
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES O=CC1=C[C@H](O)[C@@H]([C@H]([C@@H]1OC(=O)CC(C)C)O)O
Isomeric SMILES O=CC1=C[C@H](O)[C@@H]([C@H]([C@@H]1OC(=O)CC(C)C)O)O
InChI InChI=1S/C12H18O6/c1-6(2)3-9(15)18-12-7(5-13)4-8(14)10(16)11(12)17/h4-6,8,10-12,14,16-17H,3H2,1-2H3/t8-,10-,11+,12+/m0/s1
InChI Key HEWICEWYFOOYNG-OHBODLIOSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Synthetic organic
IUPAC Name Click here for help
[(1R,4S,5S,6R)-2-formyl-4,5,6-trihydroxycyclohex-2-en-1-yl] 3-methylbutanoate
International Nonproprietary Names Click here for help
INN number INN
2567 ranimycin
Synonyms Click here for help
Rancomycin 2 | U-25,873 | U-25873
Database Links Click here for help
Specialist databases
Antibiotic DB Antibiotic DB Database logo Rancomycin 2 (U-25873)
Other databases
CAS Registry No. 11056-09-0 (source: WHO INN record)
GtoPdb PubChem SID 405560291
PubChem CID 76956772
Search Google for chemical match using the InChIKey HEWICEWYFOOYNG-OHBODLIOSA-N
Search Google for chemicals with the same backbone HEWICEWYFOOYNG
Search PubMed clinical trials ranimycin
Search PubMed titles ranimycin
Search PubMed titles/abstracts ranimycin
UniChem Compound Search for chemical match using the InChIKey HEWICEWYFOOYNG-OHBODLIOSA-N
UniChem Connectivity Search for chemical match using the InChIKey HEWICEWYFOOYNG-OHBODLIOSA-N