GtoPdb is requesting financial support from commercial users. Please see our sustainability page for more information.

rosaramicin   Click here for help

GtoPdb Ligand ID: 10855

Synonyms: Antibiotic 67-694 | Antibiotic 67694 | juvenimicin A3 | rosamicin | SCH-14947 | SCH14947
PDB Ligand
Compound class: Natural product
Comment: Rosaramicin is a naturally occurring macrolide antibacterial, first isolated from the fermentation broth of Micromonospora rosaria [4] and subsequently from M. chalcea var. izumensis [1-2].
2D Structure
Click here for help

2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

✖
Click here for structure editor
Physico-chemical Properties
Click here for help

Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

✖
Hydrogen bond acceptors 10
Hydrogen bond donors 2
Rotatable bonds 6
Topological polar surface area 135.13
Molecular weight 581.36
XLogP 1.74
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
Click here for help

SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

✖
Canonical SMILES O=CC[C@H]1C[C@@H](C)C(=O)/C=C/[C@]2(C)O[C@H]2[C@@H]([C@H](OC(=O)C[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](C)C[C@@H]([C@H]1O)N(C)C)C)O)CC)C
Isomeric SMILES O=CC[C@H]1C[C@@H](C)C(=O)/C=C/[C@]2(C)O[C@H]2[C@@H]([C@H](OC(=O)C[C@H]([C@@H]([C@H]1O[C@@H]1O[C@H](C)C[C@@H]([C@H]1O)N(C)C)C)O)CC)C
InChI InChI=1S/C31H51NO9/c1-9-25-20(5)29-31(6,41-29)12-10-23(34)17(2)14-21(11-13-33)28(19(4)24(35)16-26(36)39-25)40-30-27(37)22(32(7)8)15-18(3)38-30/h10,12-13,17-22,24-25,27-30,35,37H,9,11,14-16H2,1-8H3/b12-10+/t17-,18-,19+,20-,21+,22+,24-,25-,27-,28-,29+,30+,31+/m1/s1
InChI Key IUPCWCLVECYZRV-JZMZINANSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Natural product
IUPAC Name Click here for help
2-[(1S,2R,3R,7R,8S,9S,10R,12R,14E,16S)-9-[(2S,3R,4S,6R)-4-(dimethylamino)-3-hydroxy-6-methyloxan-2-yl]oxy-3-ethyl-7-hydroxy-2,8,12,16-tetramethyl-5,13-dioxo-4,17-dioxabicyclo[14.1.0]heptadec-14-en-10-yl]acetaldehyde
International Nonproprietary Names Click here for help
INN number INN
3369 rosaramicin
Synonyms Click here for help
Antibiotic 67-694 | Antibiotic 67694 | juvenimicin A3 | rosamicin | SCH-14947 | SCH14947
Database Links Click here for help
Specialist databases
Antibiotic DB Antibiotic DB Database logo Juvenimicin A3
Other databases
CAS Registry No. 35834-26-5 (source: WHO INN record)
ChEMBL Ligand CHEMBL8965
GtoPdb PubChem SID 405560296
PubChem CID 6537204
RCSB PDB Ligand A1MAI
Search Google for chemical match using the InChIKey IUPCWCLVECYZRV-JZMZINANSA-N
Search Google for chemicals with the same backbone IUPCWCLVECYZRV
Search PubMed clinical trials rosaramicin
Search PubMed titles rosaramicin
Search PubMed titles/abstracts rosaramicin
UniChem Compound Search for chemical match using the InChIKey IUPCWCLVECYZRV-JZMZINANSA-N
UniChem Connectivity Search for chemical match using the InChIKey IUPCWCLVECYZRV-JZMZINANSA-N