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inhibitor of nuclear factor kappa B kinase subunit beta

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Immunopharmacology Ligand  Target has curated data in GtoImmuPdb

Target id: 2039

Nomenclature: inhibitor of nuclear factor kappa B kinase subunit beta

Abbreviated Name: IKK-beta

Family: IKK family

Contents:

Gene and Protein Information Click here for help
Species TM AA Chromosomal Location Gene Symbol Gene Name Reference
Human - 756 8p11.21 IKBKB inhibitor of nuclear factor kappa B kinase subunit beta
Mouse - 757 8 A2 Ikbkb inhibitor of kappaB kinase beta
Rat - 757 16q12.5 Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta
Previous and Unofficial Names Click here for help
AIM-1 | I-kappa-B kinase 2 | I-kappa-B-kinase beta | IKK2 | IKKB | inhibitor of kappa light polypeptide gene enhancer in B-cells | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta
Database Links Click here for help
Alphafold O14920 (Hs), O88351 (Mm), Q9QY78 (Rn)
BRENDA 2.7.11.10
ChEMBL Target CHEMBL1991 (Hs), CHEMBL6012 (Mm), CHEMBL4524001 (Rn)
DrugBank Target O14920 (Hs)
Ensembl Gene ENSG00000104365 (Hs), ENSMUSG00000031537 (Mm), ENSRNOG00000019073 (Rn)
Entrez Gene 3551 (Hs), 16150 (Mm), 84351 (Rn)
Human Protein Atlas ENSG00000104365 (Hs)
KEGG Enzyme 2.7.11.10
KEGG Gene hsa:3551 (Hs), mmu:16150 (Mm), rno:84351 (Rn)
OMIM 603258 (Hs)
Pharos O14920 (Hs)
RefSeq Nucleotide NM_001190720 (Hs), NM_001159774 (Mm), NM_053355 (Rn)
RefSeq Protein NP_001547 (Hs), NP_001153246 (Mm), NP_445807 (Rn)
UniProtKB O14920 (Hs), O88351 (Mm), Q9QY78 (Rn)
Wikipedia IKBKB (Hs)
Selected 3D Structures Click here for help
Image of receptor 3D structure from RCSB PDB
Description:  NEMO/IKKb association domain structure
PDB Id:  3BRV
Resolution:  2.2Å
Species:  Human
References:  13
Enzyme Reaction Click here for help
EC Number: 2.7.11.10

Download all structure-activity data for this target as a CSV file go icon to follow link

Inhibitors
Key to terms and symbols View all chemical structures Click column headers to sort
Ligand Sp. Action Value Parameter Reference
compound 47 [PMID: 28737909] Small molecule or natural product Click here for species-specific activity table Immunopharmacology Ligand Hs Inhibition 5.6 pKi 2
⤷ pKi 5.6 (Ki 2.3x10-6 M) [2]
IKK-beta inhibitor R-28 Small molecule or natural product Immunopharmacology Ligand Hs Inhibition 8.1 pIC50 10
⤷ pIC50 8.1 (IC50 7.94x10-9 M) [10]
IKK-2 inhibitor IV Small molecule or natural product Primary target of this compound Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibition 7.8 pIC50 12
⤷ pIC50 7.8 (IC50 1.79x10-8 M) [12]
Description: FRET measurement using recombinant human IKK2 (residues 1-756)
BI605906 Small molecule or natural product Immunopharmacology Ligand Hs Inhibition 7.6 pIC50 9
⤷ pIC50 7.6 (IC50 2.6x10-8 M) [9]
PHA-408 Small molecule or natural product Click here for species-specific activity table Immunopharmacology Ligand Hs Inhibition 7.4 pIC50 11
⤷ pIC50 7.4 (IC50 4x10-8 M) [11]
MLN-120B Small molecule or natural product Primary target of this compound Immunopharmacology Ligand Hs Inhibition 7.2 pIC50 15
⤷ pIC50 7.2 (IC50 6x10-8 M) [15]
LASSBio-1524 Small molecule or natural product Immunopharmacology Ligand N/A Inhibition - - 6
⤷ [6]
View species-specific inhibitor tables
Allosteric Modulators
Key to terms and symbols View all chemical structures Click column headers to sort
Ligand Sp. Action Value Parameter Reference
BMS-345541 Small molecule or natural product Primary target of this compound Click here for species-specific activity table Immunopharmacology Ligand Hs Negative 6.9 pKd 7
⤷ pKd 6.9 (Kd 1.3x10-7 M) [7]
BMS-345541 Small molecule or natural product Primary target of this compound Click here for species-specific activity table Immunopharmacology Ligand Hs Negative 6.5 pIC50 5
⤷ pIC50 6.5 (IC50 3x10-7 M) [5]
DiscoveRx KINOMEscan® screen Click here for help
A screen of 72 inhibitors against 456 human kinases. Quantitative data were derived using DiscoveRx KINOMEscan® platform.
http://www.discoverx.com/services/drug-discovery-development-services/kinase-profiling/kinomescan
Reference: 7,16
Key to terms and symbols Click column headers to sort
Target used in screen: IKK-beta
Ligand Sp. Type Action Value Parameter
lestaurtinib Small molecule or natural product Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibitor Inhibition 7.9 pKd
MLN-120B Small molecule or natural product Immunopharmacology Ligand Hs Inhibitor Inhibition 7.7 pKd
staurosporine Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 7.5 pKd
tamatinib Small molecule or natural product Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibitor Inhibition 7.2 pKd
AST-487 Small molecule or natural product Hs Inhibitor Inhibition 7.0 pKd
BMS-345541 Small molecule or natural product Immunopharmacology Ligand Hs Inhibitor Inhibition 6.9 pKd
fedratinib Small molecule or natural product Approved drug Ligand has a PDB structure Hs Inhibitor Inhibition 6.4 pKd
KW-2449 Small molecule or natural product Hs Inhibitor Inhibition 6.4 pKd
ruxolitinib Small molecule or natural product Approved drug Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibitor Inhibition 5.6 pKd
SB203580 Small molecule or natural product Immunopharmacology Ligand Hs Inhibitor Inhibition <5.5 pKd
Displaying the top 10 most potent ligands  View all ligands in screen »
EMD Millipore KinaseProfilerTM screen/Reaction Biology Kinase HotspotSM screen Click here for help
A screen profiling 158 kinase inhibitors (Calbiochem Protein Kinase Inhibitor Library I and II, catalogue numbers 539744 and 539745) for their inhibitory activity at 1µM and 10µM against 234 human recombinant kinases using the EMD Millipore KinaseProfilerTM service.

A screen profiling the inhibitory activity of 178 commercially available kinase inhibitors at 0.5µM against a panel of 300 recombinant protein kinases using the Reaction Biology Corporation Kinase HotspotSM platform.

http://www.millipore.com/techpublications/tech1/pf3036
http://www.reactionbiology.com/webapps/main/pages/kinase.aspx

Reference: 1,8
Key to terms and symbols Click column headers to sort
Target used in screen: IKKβ/IKKb(IKBKB)
Ligand Sp. Type Action % Activity remaining at 0.5µM % Activity remaining at 1µM % Activity remaining at 10µM
IKK-2 inhibitor IV Small molecule or natural product Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibitor Inhibition 9.0 12.0 8.0
K-252a Small molecule or natural product Hs Inhibitor Inhibition 38.8 17.0 3.0
Cdk1/2 inhibitor III Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 49.3 33.0 6.0
JAK inhibitor I Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 52.1 42.0 27.0
staurosporine Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 53.4 38.5 12.0
JAK3 inhibitor VI Small molecule or natural product Hs Inhibitor Inhibition 69.2 51.0 22.0
GSK-3 inhibitor XIII Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 69.8 78.0 51.0
PKR inhibitor Small molecule or natural product Ligand has a PDB structure Hs Inhibitor Inhibition 70.2 68.0 25.0
PDK1/Akt/Flt dual pathway inhibitor Small molecule or natural product Hs Inhibitor Inhibition 73.4 111.0 81.0
SP600125 Small molecule or natural product Ligand has a PDB structure Immunopharmacology Ligand Hs Inhibitor Inhibition 75.8 78.0 43.0
Displaying the top 10 most potent ligands  View all ligands in screen »
Immunopharmacology Comments
Iκβ kinase β (IKK-2) is the pivotal enzyme component of the Iκβ kinase (IKK) complex, a complex crucial in regulating expression and activation of inflammatory mediators in airway epithelium. IKK-2 is an attractive target for development of pharmaceutical inhibitors with antiinflammatory action as treatments for asthma and chronic obstructive pulmonary disease (COPD) [3-4,14].
Immuno Process Associations
Immuno Process:  Inflammation
Immuno Process:  Antigen presentation
Immuno Process:  Immune regulation
Immuno Process:  Cytokine production & signalling
Immuno Process:  Cellular signalling
Clinically-Relevant Mutations and Pathophysiology Click here for help
Disease:  Immunodeficiency 15; IMD15
Synonyms: Severe combined immunodeficiency due to IKK2 deficiency [Orphanet: ORPHA397787]
OMIM: 615592
Orphanet: ORPHA397787

References

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1. Anastassiadis T, Deacon SW, Devarajan K, Ma H, Peterson JR. (2011) Comprehensive assay of kinase catalytic activity reveals features of kinase inhibitor selectivity. Nat Biotechnol, 29 (11): 1039-45. [PMID:22037377]

2. Anthony NG, Baiget J, Berretta G, Boyd M, Breen D, Edwards J, Gamble C, Gray AI, Harvey AL, Hatziieremia S et al.. (2017) Inhibitory Kappa B Kinase α (IKKα) Inhibitors That Recapitulate Their Selectivity in Cells against Isoform-Related Biomarkers. J Med Chem, 60 (16): 7043-7066. [PMID:28737909]

3. Baxter A, Brough S, Cooper A, Floettmann E, Foster S, Harding C, Kettle J, McInally T, Martin C, Mobbs M et al.. (2004) Hit-to-lead studies: the discovery of potent, orally active, thiophenecarboxamide IKK-2 inhibitors. Bioorg Med Chem Lett, 14 (11): 2817-22. [PMID:15125939]

4. Birrell MA, Hardaker E, Wong S, McCluskie K, Catley M, De Alba J, Newton R, Haj-Yahia S, Pun KT, Watts CJ et al.. (2005) Ikappa-B kinase-2 inhibitor blocks inflammation in human airway smooth muscle and a rat model of asthma. Am J Respir Crit Care Med, 172 (8): 962-71. [PMID:16002568]

5. Burke JR, Pattoli MA, Gregor KR, Brassil PJ, MacMaster JF, McIntyre KW, Yang X, Iotzova VS, Clarke W, Strnad J et al.. (2003) BMS-345541 is a highly selective inhibitor of I kappa B kinase that binds at an allosteric site of the enzyme and blocks NF-kappa B-dependent transcription in mice. J Biol Chem, 278 (3): 1450-6. [PMID:12403772]

6. Cordeiro N, Freitas RHCN, Fraga CAM, Fernandes PD. (2020) Therapeutic Effects of Anti-Inflammatory N-Acylhydrazones in the Resolution of Experimental Colitis. J Pharmacol Exp Ther, 374 (3): 420-427. [PMID:32546529]

7. Davis MI, Hunt JP, Herrgard S, Ciceri P, Wodicka LM, Pallares G, Hocker M, Treiber DK, Zarrinkar PP. (2011) Comprehensive analysis of kinase inhibitor selectivity. Nat Biotechnol, 29 (11): 1046-51. [PMID:22037378]

8. Gao Y, Davies SP, Augustin M, Woodward A, Patel UA, Kovelman R, Harvey KJ. (2013) A broad activity screen in support of a chemogenomic map for kinase signalling research and drug discovery. Biochem J, 451 (2): 313-28. [PMID:23398362]

9. Ginn J, Sorcek R, Turner M, Young E. (2007) Substituted 3-amino-thieno[2,3-b]pyridine-2-carboxylic acid amide compounds and processes for preparing and their uses. Patent number: US20070293533. Assignee: Ginn JD, Sorcek RJ, Turner MR, Young ERR. Priority date: 06/06/2006. Publication date: 20/12/2007.

10. Kerns JK, Busch-Petersen J, Fu W, Boehm JC, Nie H, Muratore M, Bullion A, Lin G, Li H, Davis R et al.. (2018) 3,5-Disubstituted-indole-7-carboxamides as IKKβ Inhibitors: Optimization of Oral Activity via the C3 Substituent. ACS Med Chem Lett, 9 (12): 1164-1169. DOI: 10.1021/acsmedchemlett.8b00291 [PMID:30613320]

11. Mbalaviele G, Sommers CD, Bonar SL, Mathialagan S, Schindler JF, Guzova JA, Shaffer AF, Melton MA, Christine LJ, Tripp CS et al.. (2009) A novel, highly selective, tight binding IkappaB kinase-2 (IKK-2) inhibitor: a tool to correlate IKK-2 activity to the fate and functions of the components of the nuclear factor-kappaB pathway in arthritis-relevant cells and animal models. J Pharmacol Exp Ther, 329 (1): 14-25. [PMID:19168710]

12. Podolin PL, Callahan JF, Bolognese BJ, Li YH, Carlson K, Davis TG, Mellor GW, Evans C, Roshak AK. (2005) Attenuation of murine collagen-induced arthritis by a novel, potent, selective small molecule inhibitor of IkappaB Kinase 2, TPCA-1 (2-[(aminocarbonyl)amino]-5-(4-fluorophenyl)-3-thiophenecarboxamide), occurs via reduction of proinflammatory cytokines and antigen-induced T cell Proliferation. J Pharmacol Exp Ther, 312 (1): 373-81. [PMID:15316093]

13. Rushe M, Silvian L, Bixler S, Chen LL, Cheung A, Bowes S, Cuervo H, Berkowitz S, Zheng T, Guckian K et al.. (2008) Structure of a NEMO/IKK-associating domain reveals architecture of the interaction site. Structure, 16 (5): 798-808. [PMID:18462684]

14. Sommers CD, Thompson JM, Guzova JA, Bonar SL, Rader RK, Mathialagan S, Venkatraman N, Holway VW, Kahn LE, Hu G et al.. (2009) Novel tight-binding inhibitory factor-kappaB kinase (IKK-2) inhibitors demonstrate target-specific anti-inflammatory activities in cellular assays and following oral and local delivery in an in vivo model of airway inflammation. J Pharmacol Exp Ther, 330 (2): 377-88. [PMID:19478133]

15. Wen D, Nong Y, Morgan JG, Gangurde P, Bielecki A, Dasilva J, Keaveney M, Cheng H, Fraser C, Schopf L et al.. (2006) A selective small molecule IkappaB Kinase beta inhibitor blocks nuclear factor kappaB-mediated inflammatory responses in human fibroblast-like synoviocytes, chondrocytes, and mast cells. J Pharmacol Exp Ther, 317 (3): 989-1001. [PMID:16525037]

16. Wodicka LM, Ciceri P, Davis MI, Hunt JP, Floyd M, Salerno S, Hua XH, Ford JM, Armstrong RC, Zarrinkar PP et al.. (2010) Activation state-dependent binding of small molecule kinase inhibitors: structural insights from biochemistry. Chem Biol, 17 (11): 1241-9. [PMID:21095574]

How to cite this page

IKK family: inhibitor of nuclear factor kappa B kinase subunit beta. Last modified on 18/06/2020. Accessed on 23/04/2024. IUPHAR/BPS Guide to PHARMACOLOGY, https://www.guidetoimmunopharmacology.org/GRAC/ObjectDisplayForward?objectId=2039.